Since you are taking the complement of a substring, and it appears that there may be no firmly established terminology, I propose:
- a substring complement is what remains after deleting a substring,
- and more generally, a subsequence complement is what remains after deleting a subsequence.
Thus, one may refer to the substring complement of s in t, and use the notation t - s, or $t setminus s$, with the same notation for the subsequence.
I would prefer this natural language terminology over the alternative co-substring and co-subsequence, which sound unnecessarily technical to my ear, but this difference may be slight.
It does seem worthwhile, however, to distinguish between the two cases, and so I would argue against using the term co-subsequence, as you suggested in your question, to refer to the substring complement.
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