I would like to use MultiPipMaker for testing a genome alignment between two sequences, each sequence is in .fasta format, but the problem is that when I submit the couples of file that I need, the web browser sends an email that the blastz has timed out. Does anybody know why is the that?
The address of the program is:
http://pipmaker.bx.psu.edu/cgi-bin/multipipmaker
thanks
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