I assume you have an elliptic curve E defined over mathbbQ -- in simplest terms, this means a Weierstrass equation y2=x3+Ax+B with A,BinmathbbQ.
Then a mathbbQ-isogeny is a finite morphism varphi:(E,O)rightarrow(E′,O′) which is defined over mathbbQ: in other words, given locally by rational functions with mathbbQ-coefficients. An equivalent perspective is that an isogeny is essentially determined -- i.e., up to an automorphism on the target -- by its kernel E[phi], a finite
subgroup of E(overlinemathbbQ). Then the definedness over mathbbQ is equivalent to invariance under the group operatornameAut(overlinemathbbQ/mathbbQ): for every Galois automorphism sigma, we want sigmaE[phi]=E[phi].
Similarly, the mathbbQ-torsion subgroup is the subgroup of the full torsion subgroup which is defined over mathbbQ. This means E[operatornametors]capE(mathbbQ): it is just the subgroup of E(mathbbQ) consisting of points of finite order. It can also (equivalently) be defined as the Galois invariants of E[operatornametors](overlinemathbbQ) (= E[operatornametors](mathbbC)).
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