First, a comment on `studying category theory for its own sake': this slur was very much setting up a straw man. Those accessing the category theory discussion list will know that the discussion there ranges very widely, and actually discusses issues in mathematics, in contrast to other email discussion lists I access.
Second, I have found some elementary facts from category theory very useful; examples are `left adjoints preserve colmits, right adjoints preserve limits'. Many years ago, listening to Albrecht Dold on half exact functors made me realise how I could cut down considerably a proof from my thesis by using the basic idea of representable functor: this automatically led to the existence of a homotopy equivalence making a diagram commutative. Again, the theory of ends and coends does make life simpler in discussing geometric realisations.
Third, I have fairly recently realised that the general framework of fibred and cofibred categories is specially useful for discussing pullbacks and pushouts for certain hierarchical structures with which I have dealt. A basic example here is the bifibration (Groupoids) $to$ (Sets) given by the object functor.
I wish I had a good application in my work of some of the deeper theorems!
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