Stellar systems are born from clouds of turbulent gas. Although "turbulence" means that different parcels of gas move in different directions, the cloud have some overall, net angular momentum. Usually a cloud gives birth to multiple stellar systems, but even the subregion forming a given system has a net, and non-vanishing (i.e. $ne0$), angular momentum.
Parcels moving in opposite directions will collide, and friction will cause the gas to lose energy, such that the cloud contracts. Eventually subclouds moving in one direction will "win over" subclouds moving in other directions such that everything moves in the same direction, keeping the original angular momentum (minus what is ejected e.g. through jets).
This means that the central star will rotate in the same direction as the circumstellar disk and that, in general, the planets that form subsequently, will also not only orbit the star in the same direction, but also spin in the same direction around their own axes. This is called prograde rotation. Sometimes, however, collisions between bodies may cause a planet or asteroid to spin in the opposite direction. This is called retrograde rotation and is the case for Venus and Uranus.
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